Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs35880645 chr16:1768326 C/T 1.76E-11 174 25.67 18.2 4.52 KM Plot
PCPG rs35885576 chr2:242566706 T/C 1.07E-10 172 25.67 21.9 10.3 KM Plot
PCPG rs35895310 chr8:121390722 G/C 5.09E-6 176 26.88 25 19.87 KM Plot
PCPG rs35897291 chr14:74415032 T/C 4.36E-6 173 25.08 30.33 10.43 KM Plot
PCPG rs35899271 chr14:74457121 A/G 3.51E-6 177 25.17 30.93 10.3 KM Plot
PCPG rs35900502 chr15:43373929 T/C 2.31E-14 177 25.87 24.53 3.17 KM Plot
PCPG rs35918470 chr16:89949564 C/CA 0.000161 174 25.77 23.37 36.37 KM Plot
PCPG rs35931400 chr14:74627684 C/G 1.98E-5 177 25.4 26.92 10.43 KM Plot
PCPG rs35953500 chr1:40497708 C/T 6.93E-5 175 24.85 24.88 36.73 KM Plot
PCPG rs35957552 chr2:242555316 G/A 4.04E-5 178 25.87 26.47 20.2 KM Plot
PCPG rs35969769 chr16:1694922 C/CA 5.46E-5 176 25.08 28.45 19.83 KM Plot
PCPG rs35981772 chr1:40519082 C/T 0.000336 174 25.2 27.27 25.17 KM Plot
PCPG rs35981926 chr16:71500755 A/T 1.11E-16 172 24.52 29.57 3.17 KM Plot
PCPG rs35988159 chr16:1764887 A/G 6.54E-5 174 25.6 15.85 17.77 KM Plot
PCPG rs35988237 chr5:179478528 C/T 0.000238 176 24.17 29.95 14.83 KM Plot